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Plant Transcription
Factor Database
v4.0
Previous version:
v3.0
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | GSBRNA2T00109493001 | ||||||||
Common Name | GSBRNA2T00109493001 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Brassica
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Family | G2-like | ||||||||
Protein Properties | Length: 412aa MW: 45904.7 Da PI: 6.0266 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104 | 8.7e-33 | 229 | 283 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGse+AtPk++l+l+k +gLt++hvkSHLQkYR+ GSBRNA2T00109493001 229 KQRMRWTPELHEAFVEAVNQLGGSERATPKAVLKLLKNPGLTIYHVKSHLQKYRT 283 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.832 | 226 | 286 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.6E-30 | 227 | 285 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 6.81E-17 | 227 | 283 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.6E-23 | 229 | 283 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 1.7E-10 | 231 | 282 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.1E-22 | 317 | 363 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MTLANDFGYS TAMSSSFSAL HATVEDRYRK FHSSFWGSSG QELMNNPVPC HVDNSGGGYL 60 FSSSSGYCNV SAVSAHGRTS QTHPPVSTMP SDRLAMQSSL INNHQPQEFS DPLDEFFDFS 120 DHVSAPNPQE DGSGVKLVSS LELREKSEWQ TWADQLMSVD NGSEPNWSEL LGEPSPHNPN 180 SQVPQRSHDL QQILTPPRQE VIANQQHQAV SSEEQLSGRN SSASGATSKQ RMRWTPELHE 240 AFVEAVNQLG GSERATPKAV LKLLKNPGLT IYHVKSHLQK YRTARYKPET SEATGEPQEK 300 KITSIEDIKS LDMKTSVEIT QALRLQMEVQ KRLHEQLEIQ RSLQLQIEKQ GRYLQMMFEK 360 QQKLQENNGS SSELSPKQCN GTSAEVEFGL EAQAVNQTEP ASSSRKRTRE D* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | GSBRNA2T00109493001 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY045943 | 0.0 | AY045943.1 Arabidopsis thaliana unknown protein (At5g29000) mRNA, partial cds. | |||
GenBank | AY085154 | 0.0 | AY085154.1 Arabidopsis thaliana clone 13378 mRNA, complete sequence. | |||
GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013606816.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like isoform X1 | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A078EG25 | 0.0 | A0A078EG25_BRANA; BnaC09g02840D protein | ||||
STRING | Bra036123.1-P | 0.0 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G29000.2 | 0.0 | G2-like family protein |
Publications ? help Back to Top | |||
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